Picking fruit from the tree of life

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Picking fruit from the tree of life: comments on taxonomic sampling and quartet methods

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Symposium on Applied Computing archive
Proceedings of the 2001 ACM symposium on Applied computing table of contents

Las Vegas, Nevada, United States

Pages: 61 - 67

Year of Publication: 2001

ISBN:1-58113-287-5

Authors

Jonathan H. Badger	Bioinformatics Research Group, Department of Computer Science, University of Waterloo, Waterloo, Ontario, Canada
Paul Kearney	Bioinformatics Research Group, Department of Computer Science, University of Waterloo, Waterloo, Ontario, Canada

Sponsor

SIGAPP: ACM Special Interest Group on Applied Computing

Publisher

ACM New York, NY, USA

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REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

	1	Vincent Berry , Olivier Gascuel, Inferring Evolutionary Trees with Strong Combinatorial Evidence, Proceedings of the Third Annual International Conference on Computing and Combinatorics, p.111-123, August 20-22, 1997
	2	K. S. Brown. Deep Green rewrites evolutionary history of plants. Science, 285:990-991, 1999.
	3	Vincent Berry , David Bryant , Tao Jiang , Paul Kearney , Ming Li , Todd Wareham , Haoyong Zhang, A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract), Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms, p.287-296, January 09-11, 2000, San Francisco, California, United States
	4	Peter Erdös , Mike Steel , László A. Székely , Tandy Warnow, Constructing Big Trees from Short Sequences, Proceedings of the 24th International Colloquium on Automata, Languages and Programming, p.827-837, July 07-11, 1997
	5	J. Felsenstein. Cases in which parsimony and compatibility will be positively misleading. Sys. Zoo., 27:401-410, 1978.
	6	J. Felsenstein. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol., 17:368-376, 1981.
	7	W. M. Fitch. Toward defining the course of evolution: Minimal change for a specific tree topology. Sys. Zoo., 20:406-41, 1971.
	8	A. Graybeal. Is it better to add taxa or characters to a difficult phylogenetic problem? Sys. Biol., 47:9-17, 1998.
	9	M. Hasegawa, H. Kishino, and K. Yano. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol., 22:160-174, 1985.
	10	M. D. Hendy and D. Penny. A framework for the quantitative study of evolutionary trees. Sys. Zoo., 38:297-309, 1989.
	11	D. M. Hillis. Inferring complex phylogenies. Nature, 383:130, 1996.
	12	J. Kim. General inconsistency conditions for maximum parsimony: Effects of branch lengths and increasing numbers of taxa. Sys. Biol., 45:363-374, 1996.
	13	B. L. Maidak, J. R. Cole, C. T. Parker, G. M. G. Jr, N. Larsen, B. Li, T. G. Lilburn, M. J. McCaughey, G. J. Olsen, R. Overbeek, S. Pramanik, T. M. Schmidt, J. M. Tiedje, and C. R. Woese. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Research, 27:171-173, 1999.
	14	S. Poe. Sensitivity of phylogeny estimation to taxonomic sampling. Sys. Biol., 47:18-31, 1998.
	15	N. Saitou and M. Nei. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4:406-425, 1987.
	16	K. Smith and T. Warnow. Taxon sampling and accuracy of evolutionary tree reconstruction. In DIMACS Symposium on Large Phylogenetic Tree Reconstruction, 1998.
	17	K. Strimmer and A. von Haeseler. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol., 13:964-969, 1996.
	18	D. L. Swofford. PAUP* (Phylogenetic Analysis Using Parsimony and Other Methods) version 4.0b4a. Sinauer Associates, Sunderland, Massachusetts., 2000.