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Fast practical solution of sorting by reversals
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Source Symposium on Discrete Algorithms archive
Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms table of contents
San Francisco, California, United States
Pages: 12 - 21  
Year of Publication: 2000
ISBN:0-89871-453-2
Authors
Alberto Caprara  DEIS, Università di Bologna, Viale Risorgimento 2, 40136, Bologna, Italy
Giuseppe Lancia  DEI, Università di Padova, Via Gradenigo 6/A, 35131, Padova, Italy
See Kiong Ng  Smithkline Beecham Pharmaceuticals R&D, Bioinformatics, New Frontiers Science Park North, Third Avenue, Harlow, Essex, CM19 5AW, UK
Sponsors
SIGACT: ACM Special Interest Group on Algorithms and Computation Theory
SIAM : Society for Industrial and Applied Mathematics
Publisher
Society for Industrial and Applied Mathematics  Philadelphia, PA, USA
Bibliometrics
Downloads (6 Weeks): 3,   Downloads (12 Months): 19,   Citation Count: 0
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REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

 
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P. Berman and M. Karpinski, "On Some Tighter inapproximability Results", ECCC Report No. 29 (1998), University of Trier, 1998.
 
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M. Blanchette, personal communication.
 
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A. Caprara, "On the Tightness of the Alternating- Cycle Lower Bound for Sorting by Reversals", Journal of Combinatorial Optimization 3 (1999) 149-182.
 
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A. Caprara, G. Lancia and S.K. Ng, "A Column- Generation Based Branch-and-Bound Algorithm for Sorting by Reversals", in M. Farach-Colton, Fred S. Roberts, M. Vingron and M. Waterman (eds.) Mathematical Support for Molecular Biology; DIMACS Series in Discrete Mathematics and Theoretical Computer Science 47 (1999) 213-226, AMS Press.
 
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G. Carpaneto, S. Marteilo and P. Toth, "Algorithms and Codes for the Assignment Problem", Annals of Operations Research 13 (1988) 193-223.
 
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M. Farach-Colton, Fred S. Roberts, M. Vingron and M. Waterman (eds.) Mathematical Support for Molecular Biology; DIMA CS Series in Discrete Mathematics and Theoretical Computer Science 47 (1999), AMS Press.
 
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N. Franklin, "Conservation of genome form but not sequence in the transcription antitermlnation determinants of bacteriophages ,~, ~b21 and P22", Journal of Molecular Evolution 181 (1985) 75-84.
 
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A.M.H. Gerards, "Matching", in M.O. Ball, T.L. Magnanti, C.L. Monma and G.L. Nemhauser (eds.), Networks; Handbooks in Operations Research and Management Sciences, North Holland (1995).
 
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M. GrStschel, L. Lov~z and A. Schrijver, ~The Ellipsoid Method and its Consequences in Combinatorial Optimization", Combinatorica 1 (1981), 169-197.
 
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S. Hannenhalli, personal communication.
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R.W. Irving and D.A. Christie, "Sorting by Reversals: a Conjecture of Kececioglu and Sankoff', Working Paper (1996), Dept. of Computer Science, University of Glasgow.
 
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L.G. Khachian, "A Polynomial Algorithm for Linear Programming", Soviet Mathematics Doldady 20 (1979.) 191-194.
 
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J. Kececioglu and D. Sankoff, "Exact and Approximation Algorithms for Sorting by Reversals, with Application to Genome Rearrangement", Algorithmiea 13 (1995) 180-210.
 
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D. Sankoff, G. Stmdaram and J. Kececioglu, "Steiner Points in the Space of Genome Rearrangements", International Journal of Foundations of Computer Science 7 (1996) 1-9.
 
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Collaborative Colleagues:
Alberto Caprara: colleagues
Giuseppe Lancia: colleagues
See Kiong Ng: colleagues