Construction of physical maps from oligonucleotide fingerprints data

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Construction of physical maps from oligonucleotide fingerprints data

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Annual Conference on Research in Computational Molecular Biology archive
Proceedings of the third annual international conference on Computational molecular biology table of contents

Lyon, France

Pages: 268 - 277

Year of Publication: 1999

ISBN:1-58113-069-4

Authors

Guy Mayraz	Department of Computer Science, Sackler Faculty of Exact Sciences, Tel-Aviv University, Tel-Aviv 69976 ISRAEL and Gatsby Computational Neuroscience Unit, University College London, 17 Queen Square, London WC1N 3AR, U.K.
Ron Shamir	Department of Computer Science, Sackler Faculty of Exact Sciences, Tel-Aviv University, Tel-Aviv 69976 ISRAEL

Sponsors

INRIA : Institut Natl de Recherche en Info et en Automatique
SIGACT: ACM Special Interest Group on Algorithms and Computation Theory

Publisher

ACM New York, NY, USA

Bibliometrics

Downloads (6 Weeks): 1, Downloads (12 Months): 8, Citation Count: 3

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REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

	1	F. Alizadeh, R. M. Karp, L. A. Newberg, and D. K. Weisser. Physical mapping of chromosomes: A combinatorical problem in molecular biology. Algorithmica, 13:52-76, 1995.
	2	D.R. Cox, M. Burmeister, R. Price, S. Kim, and R.M. Myers. Radiation hybrid mapping: a somatic cell genetic method for reconstructing high-resolution maps of mammalian chromosomes. Science, 250:245-250, 1990.
	3	A. (3. Craig, D. Nizetic, D. Hoheisel, (3. Zehetner, and H. Lehrach. Ordering of cosmid clones covering the herpes simplex ~ type I (HSV-I) genome: A test case for fingerprinting by hybridization. Nucleic Acids Research, 18:2653-2660, 1990.
	4	A. Cutticchia, J. Arnold, and W. Timberlake. ODS: ordering DNA sequences- a physical mapping algorithm based on simulated annealing. CABIOS, 9:215-219, 1993.
	5	Y.-X. Fu, W. E. Timberlake, and J. Arnold. On the design of genome mapping experiments using short synthetic oligonucleotides. Biometrics, 48:337-359, 1992.
	6	J.D. Hoheisel, E. Maier, R. Mort, L. McCarthy, A.V. Grigoriev, L.C. Schalkwyk, D. Nizetic, F. Francis, and H. Lehrach. High resolution cosmid and P1 maps spanning the 14 Mb genome of the fission yeast S. pombe. Cell, 73:109--120, 1993.
	7	E. S. Lander and M. S. Waterman. Genomic mapping by fingerprinting random clones: A mathematical analysis. Genomics, 2:231-239, 1988.
	8	H. Lehrach, R. Drmanac, J. Hoheisel, Z. Latin, G. Lennon, A. P. Monaco, D. Nizetic, G. Zehetner, and A. Poustka. Hybridization fingerprinting in genome mapping and sequencing. In K. E. Davies and S. Tilghman, editors, Genome analysis: genetic and physical mapping, pages 39-81. Cold Spring Harbor, New York, ?.990.
	9	G. Mayraz and R. Shamir. A bayesian score for cDNA clustering. Technical report, School of Mathematics, Tel-Aviv University, Tel-Aviv, Israel, 1997.
	10	F. Michiels, A. G. Craig, G, Zehetner, G. P. Smith, and H. Lehrach. Molecular approaches to genome analysis: a strategy for the construction of ordered overlapping clone libraries. CABiOS, 3(3):203--210, 1987.
	11	R.F. Mort, A.V. Grigoriev, E. Maier, J.D. Hoheisel, and H. Lehrach. Algorithms and software tools for ordering clone libraries: appplication to the mapping of the genome of Schi~.osaccharomyces pombe. Nucleic Acids Research, 21:1965-1974, 1993.
	12	Darren M. Platt and Trevor I. Dix. Comparison of clone-ordering algorithms used in physical mapping. Genomics, 40:490-492, 1997.
	13	A. Poustka, T. Pohl, D.P. Barlow, (3. Zehetner, A. Craig, F. Michiels, E. Ehrich, A.M. Frischauf, and H. Lehrach. Molecular approaches to mammalian genetics. Cold Spring Harb Syrup Quant Biol, 51:131-139, 1986.
	14	U. Radelof, S. Hennig, P. Seranski, F. Francis, A. Schmitt, J. Ramser, C. Steffe~, A. Poustka, and H. Lehrach. Preselection of shotgun clones for sequencing by oligofmgerprinting. In Proceedings of the Human Genome Meeting (HGM '98), Turin, Italy, March 1998, page 52. Nature Genetics, 1998.

CITED BY 3

	John Krececioglu , Sanjay Shete , Jonathan Arnold, Reconstructing distances in physical maps of chromosomes with nonoverlapping probes, Proceedings of the fourth annual international conference on Computational molecular biology, p.183-192, April 2000, Tokyo, Japan
	Steffan Heber , Jens Stoye , Jörg Hoheisel , Martin Vingron, Contig selection in physical mapping, Proceedings of the fourth annual international conference on Computational molecular biology, p.155-164, April 2000, Tokyo, Japan
	Erez Hartuv , Armin Schmitt , Jörg Lange , Sebastian Meier-Ewert , Hans Lehrach , Ron Shamir, An algorithm for clustering cDNAs for gene expression analysis, Proceedings of the third annual international conference on Computational molecular biology, p.188-197, April 11-14, 1999, Lyon, France