ACM Home Page
Please provide us with feedback. Feedback
A polyhedral approach to RNA sequence structure alignment
Full text PdfPdf (1.04 MB)
Source Annual Conference on Research in Computational Molecular Biology archive
Proceedings of the second annual international conference on Computational molecular biology table of contents
New York, New York, United States
Pages: 153 - 162  
Year of Publication: 1998
ISBN:0-89791-976-9
Authors
Hans-Peter Lenhof  MPI für Informatik, Im Stadtwald, 66123 Saarbrücken, Germany
Knut Reinert  MPI für Informatik, Im Stadtwald, 66123 Saarbrücken, Germany
Martin Vingron  Deutsches Krebsforschungszentrum, Abt. Theoretische, Bioinformatik, INF 280, D-69120 Heidelberg, Germany
Sponsor
SIGACT: ACM Special Interest Group on Algorithms and Computation Theory
Publisher
ACM  New York, NY, USA
Bibliometrics
Downloads (6 Weeks): 0,   Downloads (12 Months): 11,   Citation Count: 3
Additional Information:

references   cited by   index terms   collaborative colleagues  

Tools and Actions: Request Permissions Request Permissions    Review this Article  
DOI Bookmark: Use this link to bookmark this Article: http://doi.acm.org/10.1145/279069.279109
What is a DOI?

REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

 
BMR95
Vineet Bafna, S. MuthmkSshnan, and R. Ravi. Computing similarity between tL~,TA strings. In Zvi Galil and Esko Ukkonen, editors, Combinatorial Pattern Matching, pages 1-16, Espoo, Finland, july 1995. Springer.
CJK+97
 
CM94
Florence Corpet and Bernard Michot. RNAlign program: alignment of RNA sequences using both primary and secondary structures. CABIOS, 10(4):389- 399, 1994.
 
dRdPCdW94
P. de Rijk, Y. Van de Peer, S. Chapelle, and tL de Wachter. Database on the structure of small ribosomal subunit RNA. Nucleic Acids Research, 22:3495- 3501, 1994.
 
ED94
Sean P~ Eddy and Richard Durbin. RNA sequence analysis using covariance models. Nucleic Acids Research, 22(11):2079-2088, 1994.
 
GHS97
3. Gorodtdn, L. J. Heyer, and G. D. Stormo. Finding the most significant common sequence and structure motifs in a set of RNA sequences. Nucleic Acids Research, 25:3724-3732, 1997.
 
JT97
M. Jfmger and S. Thienel. The design of the branch and cut system ABA- CUS. Technical Report No. 97.260, Institut ffr Informatik, UniversitSt zu I{51n, 1997.
 
Lev69
M. Levitt. Detailed molecular model for transfer ribonucleic acid. Nature, 224:759-763, 1969.
MN95
 
NT73
G.L. Nemhauser and L.E. Trotter. Properties of vertex paddng and independence system polyhedra. Mathematical Programming, 6:48-61, 1973.
 
NW88
RLM+97
 
San85
D. Sankoff. Simultaneous solution of the RNA folding, alignment and protosequence problems. SIAM Journal on Applied Mathematics, 45(5):810-825, 1985.
 
TIAS77
S. Tsuldyama, M. Ide, H. Ariyoshi, and I. Shirawaka. A new algorithm for generating all the maximal independent sets. SIAM Journal on Computing, 6:505-517, 1977.
 
Wat89
Michael S. Waterman. Consensus methods for folding single-stranded nucleic adds. In Mathematical Methods .for DNA Sequences., pages 185-224. CRC Press, Boca Raton, FI, 1989.


Collaborative Colleagues:
Hans-Peter Lenhof: colleagues
Knut Reinert: colleagues
Martin Vingron: colleagues