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 REFERENCES
Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.
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1
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C.B. Anfinsen, Principles that Govern the Folding of Protein Chains, Science 181 (1973), 223-230.
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2
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E.M. Boczko, and C. Brooks, First-Principles Calculation of the Folding Free Energy of a Three-Helix Bundle Protein, Science 269 (1995), 393-396.
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3
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D.G. Covell, Folding Protein a-Carbon Chains into Compact Forms by Monte Carlo Methods, PROTEINS: Structure, Function, and Genetics 14 (1992), 409-420.
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4
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D.G. Covell, Lattice Model Simulations of Polypeptide Chain Folding, Journal of Molecular Biology 235 (1994), 1032-1043.
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5
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K.A. Dill, Dominant Forces in Protein Folding, Biochemistry 29 (1990), 7133-7155.
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6
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K.A. Dill, A.T. Phillips, and J.B. Rosen, CGU: An Algorithm for Molecular Structure Prediction, i/VIA Volumes in Mathematics and its Applications (1996), forthcoming.
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7
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K.A. Dill, A.T. Phillips, and J.B. Rosen, Molecular Structure Prediction by Global Optimization, Journal of Global Optimization (1996), forthcoming.
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8
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D. Hinds, and M. Levitt, Exploring Conforman'onal Space with a Simple Lattice Model for Protein Structure, Journal of Molecular Biology 243 (1994), 668-682.
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9
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I. Kuntz, G. Crippen, P. Kollman, and D. Kimmelman, Calculation of Protein Tertiary Structure, Journal of Molecular Biology 106 (1976), 983-994.
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10
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M. Levitt, and A. Warshel, Computer Simulation of Prorein Folding, Nature 253 (1975), 694-698.
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11
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S. Miyazawa, and R.L. Jernigan, A New Substitution Matrix for Protein Sequence Searches Based on Contact Frequencies in Protein Structures, Protein Engineering 6 (1993): 267-278.
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12
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A. Monge, R. Friesner, and B. Honig, An Algorithm to Generate Low-Resolution Protein Tertiary Structures from Knowledge of Secondary Structure, Proceedings of the National Academy of Science USA 91 (1994), 5027- 5029.
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13
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A.T. Phillips, J.B. Rosen, and V.H. Walke, Molecular Structure Determination by Convex Global Underestimation of Local Energy Minima, Dimacs Series in Discrete Mathematics and Theoretical Computer Science 23 (1995), P.M. Pardalos, G.-L. Xue, and D. Shalloway (Eds), 181-198.
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14
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M. Sippl, M. Hendlich, and P. Lackner, Assembly of Polypeptide and Protein Backbone Conformations from Low Energy Ensembles of Short Fragments: Development of Strategies and Construction of Models for Myoglobin, Lysozyme, and Thymosin Beta 4, Protein Science 1 (1992), 625-640.
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15
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J. Skolnick, and A. Kolinski, Simulations of the Folding of a Globular Protein, Science 250 (1990), 1121 - 1125.
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16
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R. Srinivasan and G.D. Rose, LINUS: A Hierarchic Procedure to Predict the Fold of a Protein, PROI~INS: Structure, Function, and Genetics 22 (1995), 81-99.
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17
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M.D. Stmthers, R.P. Cheng, and B. Imperiali, Design of a Monomeric 23-Residue Polypeptide with Defined Tertiary Structure, Science 271 (1996), 342-345.
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18
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S. Sun, P.D. Thomas, and K.A. Dill, A Simple Protein Folding Algorithm using a Binary Code and Secondary Structure Constraints, Protein Engineering 8 (1995), 769-778.
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19
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S. Vajda, M.S. Jafri, O.U. Sezerman, and C. DeLisi, Necessary Conditions for Avoiding Incorrect Polypeptide Folds in Conformational Search by Energy Minimization, Biopolymers 33 (1993), 173-192.
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20
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A. Wallqvist, and M. Ullner, A Simplified Amino Acid Potential for use in Structure Predictions of Proteins, PROTEINS: Structure, Function, and Genetics 18 (1994), 267-280.
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21
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C. Wilson, and S. Doniach, A Computer Model to Dynamically Simulate Protein Folding - Studies with Crambin, PROTEINS: Structure, Function, and Genetics 6 (1989), 193-209.
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22
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K. Yue, and K.A. Dill, Folding Proteins with a Simple Energy Function and Extensive Conformational Searching, Protein Science 5 (1996), 254-261.
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