ReAligner

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ReAligner: a program for refining DNA sequence multi-alignments

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Annual Conference on Research in Computational Molecular Biology archive
Proceedings of the first annual international conference on Computational molecular biology table of contents

Santa Fe, New Mexico, United States

Pages: 9 - 16

Year of Publication: 1997

ISBN:0-89791-882-7

Authors

Eric L. Anson	Dept. of Computer Science, University of Anzona, Tucson, AZ
Eugene W. Myers	Dept. of Computer Science, University of Anzona, Tucson, AZ

Sponsors

SIGACT: ACM Special Interest Group on Algorithms and Computation Theory
DOE : Department of Energy

Publisher

ACM New York, NY, USA

Bibliometrics

Downloads (6 Weeks): 7, Downloads (12 Months): 36, Citation Count: 3

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references cited by index terms collaborative colleagues

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REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

	1	J.G. Barton and R.F. Sternberg, A strategy for rapid multiple alignment of protein sequences, J. Mol. Biol., 198 (1987), 327-337.
	2	G. Churchill and M. Waterman, The Accuracy of DNA Sequences: Estimating Sequence Quality. Genomics 14 (1992), 89-98.
	3	F. Corpet, Multiple sequence alignment with hierarchical clustering. Nucl. Acids. Res. 16 (1988), 10881- 10890.
	4	D. Feng and R. Doolittle, Progressive sequence alignment as a prerequisite to correct phytogenetic trees. J. Mol. Evol. 25 (1987), 351-360.
	5	D. Higgins and P. Sharpe, CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73 (1988), 237-244.
	6	X. Huang, An improved sequence assembly program. Genomics 33 (1996), 21-31.
	7	A. Krogh, M. Brown, I.S. Mian, K. Sjolander and D. Haussler (1994) Hidden Markov models in computational biology, J. Mol. Biol., 235, 1501-1531.
	8	W. Taylor, Multiple sequence alignment by a pairwise algorithm. CABIOS 3 (1987), 81-87.
	9	M. Waterman and M. Perlwitz, Line geometries for sequence comparison. Bull. Math. Biol. 46 (1984), pp. 567-577.

CITED BY 3

	John Kececioglu , Jun Ju, Separating repeats in DNA sequence assembly, Proceedings of the fifth annual international conference on Computational biology, p.176-183, April 22-25, 2001, Montreal, Quebec, Canada
	Wei-Ta Chu , Herng-Yow Chen, Cross-media correlation: a case study of navigated hypermedia documents, Proceedings of the tenth ACM international conference on Multimedia, December 01-06, 2002, Juan-les-Pins, France
	Degui Zhi , Uri Keich , Pavel Pevzner , Steffen Heber , Haixu Tang, Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly, IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), v.4 n.1, p.54-64, January 2007