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Scientific computing using virtual high-performance computing: a case study using the Amazon elastic computing cloud
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Source ACM International Conference Proceeding Series; Vol. 338 archive
Proceedings of the 2008 annual research conference of the South African Institute of Computer Scientists and Information Technologists on IT research in developing countries: riding the wave of technology table of contents
Wilderness, South Africa
Pages 94-103  
Year of Publication: 2008
ISBN:978-1-60558-286-3
Author
Scott Hazelhurst  University of the Witwatersrand, Johannesburg, South Africa
Sponsor
Microsoft : Microsoft
Publisher
ACM  New York, NY, USA
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ABSTRACT

High-performance computing systems are important in scientific computing. Clusters of computer systems --- which range greatly in size --- are a common architecture for high-performance computing. Small, dedicated clusters are affordable and cost-effective, but may not be powerful enough for real applications. Larger dedicated systems are expensive in absolute terms and may be inefficient because many individual groups may not be able to provide sustained workload for the cluster. Shared systems are cost-effective, but then availability and access become a problem.

An alternative model is that of a virtual cluste, as exemplified by Amazon's Elastic Computing Cloud (EC2). This provides customers with storage and CPU power on an ondemand basis, and allows a researcher to dynamically build their own, dedicated cluster of computers when they need it. Used by commercial web services deployers, this technology can be used in scientific computing applications. This paper presents a case study of the use of EC2 for scientific computing. The case study concludes that EC2 provides a feasible, cost-effective model in many application areas.


REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

 
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Amazon. Amazon Elastic Compute Cloud developer guide. http://s3.amazonaws.com/awsdocs/EC2/2008-02-01/ec2-dg-2008-02-01.pdf, Feb. 2008. API version 2008-02-01.
2
 
3
M. Boguski, T. Lowe, and C. Tolstoshev. dbEST--database for expressed sequence tags. Nature Genetics, 4(4):332--3, Aug. 1993.
 
4
J. Y. Choi, Y. Yang, S. Kim, and D. Gannon. V-lab-protein: Virtual collaborative lab for protein sequence analysis. In Proceedings of the IEEE Workshop on High-Throughput Data Analysis for Proteomics and Genomics, Nov. 2007.
 
5
S. Garfinkel. An evaluation of Amazon's grid computing services: EC2, S3 and SQS. Technical report, Harvard University, 2008. Technical Report TR-08-07.
 
6
S. Hazelhurst. Algorithms for clustering EST sequences: the wcd tool. South African Computer Journal, 40:51--62, June 2008.
 
7
 
8
S. Nagaraj, R. Gasser, and S. Ranganathan. A hitchhiker's guide to expressed sequence tag (EST) analysis. Briefings in Bioinformatics, 8(1):6--21, 2007.
9
 
10
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