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Tackling component interoperability in quantum chemistry software
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Proceedings of the 2007 symposium on Component and framework technology in high-performance and scientific computing table of contents
Montreal, Quebec, Canada
SESSION: Scientific applications -- part 2 table of contents
Pages: 101 - 110  
Year of Publication: 2007
ISBN:978-1-59593-867-1
Authors
Fang Peng  Ames Laborabory, Ames, IA
Meng-Shiou Wu  Ames Laborabory, Ames, IA
Masha Sosonkina  Ames Laborabory, Ames, IA
Theresa Windus  Iowa State University, Ames, IA
Jonathan Bentz  Cray Inc., Mendota Heights, MAN
Mark Gordon  Ames Laboratory, Ames, IA
Joseph Kenny  Sandia National Laboratories, Livermore, CA
Curtis Janssen  Sandia National Laboratories, Livermore, CA
Sponsors
ACM: Association for Computing Machinery
SIGPLAN: ACM Special Interest Group on Programming Languages
Publisher
ACM  New York, NY, USA
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ABSTRACT

The Common Component Architecture (CCA) offers an environment that allows scientific packages to dynamically interact with each other through components. Conceptually, a computation can be constructed with plug-and-play components from any componentized scientific package; however, providing such plug-and-play components from scientific packages requires more than componentizing functions/subroutines of interest, especially for large-scale scientific packages with a long development history. In this paper, we present our efforts to construct components for the integral evaluation - a fundamental sub-problem of quantum chemistry computations - that conform to the CCA specification. The goal is to enable fine-grained interoperability between three quantum chemistry packages, GAMESS, NWChem, and MPQC, via CCA integral components. The structures of these packages are quite different and require different approaches to construct and exploit CCA components. We focus on one of the three packages, GAMESS, delineating the structure of the integral computation in GAMESS, followed by our approaches to its component development. Then we use GAMESS as the driver to interoperate with integral components from another package, MPQC, and discuss the possible solutions for interoperability problems along with preliminary results.


REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

 
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Babel, http://www.llnl.gov/CASC/components/babel.html
 
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The Massively Parallel Quantum Chemistry Program (MPQC), Version 2.3.1, Curtis L. Janssen, Ida B. Nielsen, Matt L. Leininger, Edward F. Valeev, Edward T. Seidl, Sandia National Laboratories, Livermore, CA, USA, 2004.
 
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Aprà, E.; Windus, T.L.; Straatsma, T.P.; Bylaska, E.J.; de Jong, W.; Hirata, S.; Valiev, M.; Hackler, M.; Pollack, L.; Kowalski, K.; Harrison, R.; Dupuis, M.; Smith, D.M.A; Nieplocha, J.; Tipparaju V.; Krishnan, M.; Auer, A.A.; Brown, E.; Cisneros, G.; Fann, G.; Fruchtl, H.; Garza, J.; Hirao, K.; Kendall, R.; Nichols, J.; Tsemekhman, K.; Wolinski, K.; Anchell, J.; Bernholdt, D.; Borowski, P.; Clark, T.; Clerc, D.; Dachsel, H.; Deegan, M.; Dyall, K.; Elwood, D.; Glendening, E.; Gutowski, M.; Hess, A.; Jaffe, J.; Johnson, B.; Ju, J.; Kobayashi, R.; Kutteh, R.; Lin, Z.; Littlefield, R.; Long, X.; Meng, B.; Nakajima, T.; Niu, S.; Rosing, M.; Sandrone, G.; Stave, M.; Taylor, H.; Thomas, G.; van Lenthe, J.; Wong, A.; Zhang, Z.; "NWChem, A Computational Chemistry Package for Parallel Computers, Version 4.7" (2005), Pacific Northwest National Laboratory, Richland, Washington 99352-0999, USA
 
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Aprà, E.; Windus, T.L.; Straatsma, T.P.; Bylaska, E.J.; de Jong, W.; Hirata, S.; Valiev, M.; Hackler, M.; Pollack, L.; Kowalski, K.; Harrison, R.; Dupuis, M.; Smith, D.M.A; Nieplocha, J.; Tipparaju V.; Krishnan, M.; Auer, A.A.; Brown, E.; Cisneros, G.; Fann, G.; Fruchtl, H.; Garza, J.; Hirao, K.; Kendall, R.; Nichols, J.; Tsemekhman, K.; Wolinski, K.; Anchell, J.; Bernholdt, D.; Borowski, P.; Clark, T.; Clerc, D.; Dachsel, H.; Deegan, M.; Dyall, K.; Elwood, D.; Glendening, E.; Gutowski, M.; Hess, A.; Jaffe, J.; Johnson, B.; Ju, J.; Kobayashi, R.; Kutteh, R.; Lin, Z.; Littlefield, R.; Long, X.; Meng, B.; Nakajima, T.; Niu, S.; Rosing, M.; Sandrone, G.; Stave, M.; Taylor, H.; Thomas, G.; van Lenthe, J.; Wong, A.; Zhang, Z.; "NWChem, A Computational Chemistry Package for Parallel Computers, Version 4.7" (2005), Pacific Northwest National Laboratory, Richland, Washington 99352-0999, USA
 
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Fang Peng, Meng-Shiou Wu, Masha Sosonkina, Ricky A. Kendall, Michael W. Schmidt, Mark S. Gordon, Coupling GAMESS via Standardized Interfaces, HPC-GECO/Compframe, Paris, France, June 19-20 2006.
 
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Boyana Norris, Jaideep Ray, Robert C. Armstrong, Lois C. McInnes, David E. Bernholdt, Wael R. Elwasif, Allen D. Malony, Sameer Shende: Computational Quality of Service for Scientific Components. CBSE 2004: 264--271.
 
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MPQC, The Massively Parallel Quantum Chemistry Program, http://www.mpqc.org
 
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Joseph P. Kenny, Curtis L. Janssen, Edward F. Valeev, and Theresa L. Windus,."Components for Integral Evaluation in Quantum Chemistry", Journal of Computational Chemistry, submitted.
 
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CCAFFEINE, a CCA Component Framework for Parallel Computing, http://www.cca-forum.org/ccafe/
 
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Libint library, http://www.chem.vt.edu/chem-dept/valeev/software/libint/libint.html
 
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C. L. Janssen, J. P. Kenny, I. M. B. Nielsen, M. Krishnan, V. Gurumoorthi, E. F. Valeev, and T. L. Windus, "Enabling new capabilities and insights from quantum chemistry by using component architectures", Journal of Physics: Conference Series, 46 220--228 (2006).
 
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Collaborative Colleagues:
Fang Peng: colleagues
Meng-Shiou Wu: colleagues
Masha Sosonkina: colleagues
Theresa Windus: colleagues
Jonathan Bentz: colleagues
Mark Gordon: colleagues
Joseph Kenny: colleagues
Curtis Janssen: colleagues