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TNPACK—a truncated Newton minimization package for large-scale problems: II. Implementation examples
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Volume 18 ,  Issue 1  (March 1992) table of contents
Pages: 71 - 111  
Year of Publication: 1992
ISSN:0098-3500
Authors
Tamar Schlick  New York Univ., New York, NY
Aaron Fogelson  Univ. of Utah, Salt Lake City
Publisher
ACM  New York, NY, USA
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REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

 
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FAUCI, L., AND FOGELSON, A. Truncated Newton methods and the modeling of complex immersed elastic structures. Comm. Pure Appl. Math. In press.
 
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FOGELSON, A. L. A mathematical model and numerical method for studying platelet adhesion and aggregation during blood clotting. J. Comput. Phys. 56, (1984), 111-134.
 
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GILL, P. E., MURRAY, W., AND WRIGHT, M.H. Practlcal Opttmization. Academic Press, New York, 1983.
 
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NASH, S. G., AND SOFER, A. Assessing a search direction within a truncated Newton method. Oper. Res. Lett. 9, (1990), 219-221.
 
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NOCEDAL, J. Updating quasi-Newton matrices with limited storage. Math. Comput. 35, (1980), 773-782.
 
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OPPE, T. C., JOUBERT, W. D., AND KINCAID, D. R. NSPCG User's Guide. Version 1.0: A package for solving large sparse linear systems by various iterative methods. Tech. Rep. CNA-216, Center for Numerical Analysis, The Univ. of Texas at Austin, 1988.
 
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SCHLICK, T. Modeling and minimization techniques for predicting three-dimensional structures of large biological molec, ules. Ph.D. thesis, New York Univ., Dept. of Mathematics, 1987. Available through Uniw~rsity Microfilm International.
 
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SCHLICK, T. New approaches to potential energy minimization and molecular dynamics algorithms. Comput. Chem. 15, (1991), 251-260.
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SCHLICK, T., AND OVERTON, M. A powerful truncated Newton method for potential energy minimization. J. Comput. Chem. 8, (1987), 1025-1039.
 
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SCHLICK, T., AND OVERTON, M.L. A study of limited-memory quasi-Newton and truncated Newton methods. In progress.
 
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SCHLICK, T., FIGUEROA, S., AND MEZEI, M. A molecular dynamics of a water droplet by the Langevin/Implicit-Euler scheme. J. Chem. Phys. 94, (1991), 2118-2119.
 
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SCHLICK, T., HINGERTY, B. E., PESKIN, C. S., OVERTON, M. L., AND BROYDE~, S. Search strategies, minimization algorithms, and molecular dynamics simulations tbr exploring conformational spaces of nucleic acids. In Theoretical Biochemistry and Molecular Biophysics, Volume l: Nucleic Acids, D. L. Beveridge and R. Lavery, Eds. Adenine Press, Guilderland, N.Y., 1991, 39-58.
 
30
Zou, X., NAVON, I. M., BERGER, M., PHUA, P. K. H., LE DIMET, F. X., NOUAILLER, A., AND SCHLICK, T. Numerical experience with hmited-memory quasi-Newton and truncated Newton methods. SIAM J. Optim. To appear.


Collaborative Colleagues:
Tamar Schlick: colleagues
Aaron Fogelson: colleagues