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A study of evolutionary robustness in stochastically tiled polyominos
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Source Genetic And Evolutionary Computation Conference archive
Proceedings of the 2005 conference on Genetic and evolutionary computation table of contents
Washington DC, USA
SESSION: Artificial life, evolutionary robotics, and adaptive behavior table of contents
Pages: 19 - 26  
Year of Publication: 2005
ISBN:1-59593-010-8
Authors
Justin Schonfeld  Iowa State University, Ames, IA
Daniel Ashlock  University of Guelph, Guelph, Ontario
Sponsors
SIGEVO: ACM Special Interest Group on Genetic and Evolutionary Computation
ACM: Association for Computing Machinery
Publisher
ACM  New York, NY, USA
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ABSTRACT

Given an evolutionary optimization problem with many possible genotypes for each phenotype this study investigates if the evolved genes for a given phenotype are more robust to point mutation than randomly sampled genes for the same phenotype. This question is addressed using a cellular representation for polyominos in the plane. The evolutionary computation system optimizes for shapes which pack well onto the surface of a torus when dropped at random. For the majority of the evolved phenotypes the evolved genes for a given shape proved to be significantly more robust to point mutation than those sampled at random for that same shape. A few evolved genotypes, however, were not significantly more robust than those sampled at random and in some cases were less robust. These observations are placed in the context of the fitness landscape for the representation.


REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

 
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C. H. C, M. P. Eastwood, M. Prentiss, Z. Luthey-Schulten, and P. G. Wolynes. Folding funnels: the key to robust protein structure prediction. Journal of Computational Chemistry, 23:138--146, 2002.
 
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R. J. Larsen and M. L. Marx. Introduction to mathematical statistics and its applications. Prentice Hall, Engelwood Cliffs, New Jersey, 1981.
 
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J. Schonfeld and D. Ashlock. Comparison of robustness of solutions located by evolutionary computation and other search algorithms. In Proceedings of the 2004 Congress on Evolutionary Computation, volume 1, pages 250--257, Piscataway, New Jersy, 2004. IEEE Press.
 
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D. Taverna and R. A. Goldstein. The distribution of structures in evolving protein populations. Biopolymers, 53:1--8, 2000.
 
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C. O. Wilke, J. L. Wang, C. Ofria, R. E. Lenski, and C. Adami. Evolution of digital organisms survival of the flattest. Nature, 412:331--333, 2001.


Collaborative Colleagues:
Justin Schonfeld: colleagues
Daniel Ashlock: colleagues