Biomedical computing and visualization software environments

ABSTRACT

Problem-solving environments and advanced visualization take on the complexity of biomedical computing, improving its utility to scientists and clinicians alike.

REFERENCES

• 1: Rob Armstrong , Dennis Gannon , Al Geist , Katarzyna Keahey , Scott Kohn , Lois McInnes , Steve Parker , Brent Smolinski, Toward a Common Component Architecture for High-Performance Scientific Computing, Proceedings of the The Eighth IEEE International Symposium on High Performance Distributed Computing, p.13, August 03-06, 1999
• 2: Bramley, R., Char, B., Gannon, D., Hewett, T., Johnson, C., and Rice, J. Enabling technologies for computational science: Frameworks, middleware, and environments. In Proceedings of the Workshop on Scientific Knowledge, Information, and Computing, E. Houstis, J. Rice, E. Gallopoulos, and R. Bramely, Eds. Kluwer Academic Publishers, Boston, 2000.
• 3: Dennis Gannon , Randall Bramley , Thomas Stuckey , Juan Villacis , Jayashree Balasubramanian , Esra Akman , Fabian Breg , Shridhar Diwan , Madhusudhan Govindaraju, Developing Component Architectures for Distributed Scientific Problem Solving, IEEE Computational Science & Engineering, v.5 n.2, p.50-63, April 1998 [doi>10.1109/99.683742]
• 4: Cole, M. and Parker, S. Dynamic compilation of C++ template code. Scientific Programming (2003), 321--327.
• 5: J. Davison de St. Germain , John McCorquodale , Steven G. Parker , Christopher R. Johnson, Uintah: A Massively Parallel Problem Solving Environment, Proceedings of the Ninth IEEE International Symposium on High Performance Distributed Computing (HPDC'00), p.33, August 01-04, 2000
• 6: Johnson, C., Parker, S., and Weinstein, D. Component-based problem-solving environments for large-scale scientific computing. Concurrency and Computation: Practice and Experience 14 (2002), 1337--1349.
• 7: Johnson, C. and Parker, S. Applications in computational medicine using SCIRun: A computational steering programming environment. In Proceedings of Supercomputer `95 (San Diego, Dec. 4--8), IEEE Press, 1995, 2--19.
• 8: Steven G. Parker , David W. Weinstein , Christopher R. Johnson, The SCIRun computational steering software system, Modern software tools for scientific computing, Birkhauser Boston Inc., Cambridge, MA, 1997
• 9: Steven G. Parker , Christopher R. Johnson, SCIRun: a scientific programming environment for computational steering, Proceedings of the 1995 ACM/IEEE conference on Supercomputing (CDROM), p.52-es, December 04-08, 1995, San Diego, California, United States [doi>10.1145/224170.224354]
• 10: Scientific Computing and Imaging Institute. SCIRun and BioPSE PowerApps; available from www.sci.utah.edu.
• 11: Zhang, K., Damevski, K., Venkatachalapathy, V., and Parker, S. SCIRun2: A CCA framework for high-performance computing. In Proceedings of the Ninth International Workshop on High-Level Parallel Programming Models and Supportive Environments (Santa Fe, NM, Apr. 26--30). IEEE Computer Society Press, 2004.

INDEX TERMS

Primary Classification:
  J. Computer Applications
  J.3 LIFE AND MEDICAL SCIENCES

Additional Classification:
  H. Information Systems
  H.5 INFORMATION INTERFACES AND PRESENTATION (I.7)
      H.5.1 Multimedia Information Systems
      H.5.2 User Interfaces (D.2.2, H.1.2, I.3.6)

  I. Computing Methodologies
  I.6 SIMULATION AND MODELING
      I.6.0 General
      I.6.1 Simulation Theory
      I.6.2 Simulation Languages
      I.6.3 Applications
      I.6.7 Simulation Support Systems
      I.6.8 Types of Simulation