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A parallel algorithm for DNA alignment
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Crossroads archive
Volume 9 ,  Issue 3  (March 2003) table of contents
Pages: 10 - 15  
Year of Publication: 2003
ISSN:1528-4972
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Publisher
ACM  New York, NY, USA
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REFERENCES

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1 Adams, M.D., S.E. Celniker, R.A. Holt, C.A. Evans, J.D. Gocayne et. al. "The Genome Sequence of Drosophila melanogaster." Science 287 (2000), 2185-2195.
 
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2 Avery, O, C.M. MacLeod and M. McCarty. "Studies on the chemical nature of the substance inducing transformation of pneumococcal types. Induction of transformation by a desoxyribonucleic acid fraction isolated from Pneumococcus Type III." Journal of Experimental Medicine, 79 (1944), 137-158.
 
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3 Chao, K.M., J. Zhang, J. Ostell and W. Miller. "A Local Alignment Tool for Very Long DNA Sequences." Computer Applications in the Biosciences, 11(1995) 147-153.
 
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4 Delcher, A., S. Kasif, R. Fleischmann, J. Peterson, O. White and S. Salzberg. "Alignment of Whole Genomes." Nucleic Acids Research, 27(1999) 2369-2376.
 
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6 Hershey, A. and M. Chase. "Independent function of the viral protein and nucleic acid fraction I growth of bacteriophage." The Journal of General Physiology, 36 (1952), 39-56.
 
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8 Miller, W. "Comparison of genomic DNA sequences: solved and unsolved problems." Bioinformatics, 17 (2001), 391-7.
 
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9 Needleman, S.B. and C.D. Wunsch. "A general method applicable to the search of similarities in the amino acid sequence of two proteins." Journal of Molecular Biology, 48 (1970), 443-453.
 
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10 NCBI Genbank. http://www.ncbi.nlm.nih.gov/Genbank/index.html, February 1, 2002.
 
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11 Royce, T.E. A Parallel Algorithm for Approximating the Optimal Alignment of Two Genome-Scale DNA Sequences. Honors Thesis.Washington and Lee University, 2002.
 
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13 Venter, J.C., et al. "The Sequence of the Human Genome." Science, 291 (2001), 1304-1351.
 
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14 Waterman, M.S. and T.F. Smith. "Identification of common molecular subsequences." Journal of Molecular Biology, 147 (1981), 195-197.
 
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15 Williams, G. MSBAR. European Molecular Biology Open Software Suite, 1999.

Collaborative Colleagues:
Thomas Royce: colleagues
Rance Necaise: colleagues