De Novo peptide sequencing via tandem mass spectrometry

Subscribe (Full Service)


	Search: The ACM Digital Library The Guide

	Feedback

De Novo peptide sequencing via tandem mass spectrometry: a graph-theoretical approach

Full text

Pdf (1.24 MB)

Source

Annual Conference on Research in Computational Molecular Biology archive
Proceedings of the third annual international conference on Computational molecular biology table of contents

Lyon, France

Pages: 135 - 144

Year of Publication: 1999

ISBN:1-58113-069-4

Authors

Vlado Dančík	Millennium Pharmaceuticals, 40 Erie Street, Cambridge, MA andMathematical Institute, Slovak Academy of Sciences, Grešákova 6, 040 01 Košice, Slovakia
Theresa A. Addona	Millennium Pharmaceuticals, 40 Erie Street, Cambridge, MA
Karl R. Clauser	Millennium Pharmaceuticals, 40 Erie Street, Cambridge, MA
James E. Vath	Millennium Pharmaceuticals, 40 Erie Street, Cambridge, MA

Sponsors

INRIA : Institut Natl de Recherche en Info et en Automatique
SIGACT: ACM Special Interest Group on Algorithms and Computation Theory

Publisher

ACM New York, NY, USA

Bibliometrics

Downloads (6 Weeks): 3, Downloads (12 Months): 39, Citation Count: 4

Additional Information:

references cited by index terms collaborative colleagues peer to peer

Tools and Actions:	Request Permissions Review this Article Save this Article to a Binder Display Formats: BibTeX EndNote ACM Ref

DOI Bookmark:	Use this link to bookmark this Article: http://doi.acm.org/10.1145/299432.299471 What is a DOI?

REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

	1	C. Bartels. Biorned. Envirom. Mass Spectrorn., 19:363-368, 1990.
	2	M. F. Bean, S. A. Cart, G. C. Thorne, M. H. Reilly, and S. J. Gaskell. Anal. Chem., 63:1473-81, 1991.
	3	K. Biemann. Methods. Enzyrnol., 193:886-887, 1990.
	4	K. R, Clauser, P. R. Baker, and A. L. Burlingame, In 44th ASMS Conference on Mass Spectrometry and Allied Topics, Portland, Oregon, May i~-16, page 365, Portland, OR, May 12-16 1996.
	5	K. R. Clauser, P. R. Baker, and A. L. Burlingarne. submitted, 1998.
	6	K. R. Clauser, P. R. Baker, R. A. Foulk, S. J. Fisher, and A. L. Burlingarne. submitted, 1998.
	7	T. H. Cormen, C. E. Leiaerson, and R. L. Rivest. MIT Press, 1991.
	8	J. Fernandez de Cosslo, J. Gonzales, and V. Besada. CABIOS, 11(4):427-434, 1995.
	9	J. K. Eng, A. L. McCormack, and J. R. Yates. J. Am. Soc. Mass Spectrorn., 5:976-989, 1994.
	10	D. Fenyo. CABIOS, 13:617-618, 1997.
	11	D. Fenyo, J. Qin, and B.T. Chait. Electrophoresis, 19:998-1005, 1998.
	12	C. W. Harem, W. E. Wilson, and D. J. Harvan. CABiOS, 2:365, 1986.
	13	W. M. Hines, A. M. Falick, A. L. Burlingame, and B. W. Gibson. J. Am. Soc. Mass. Spectrorn., 3:326-336, 1992.
	14	S. Hopper, R.S. Johnson, J.E. Vath, and K. Biemann. J. Biol. Chem., 264:20438-20447, 1989.
	15	D. F. Hunt, J. R. d. Yates, J. Shabanowitz, S. Winston, and C. R. Hauer. Proc. Natl. Acad. Sci. USA, 83:6233-6237, 1986.
	16	K. Ishikawa and Y. Niva. Biomedical and Environmental Mass Spectrometry, 13:373-380, 1986.
	17	C. It. JimSmez, K. W. Li, K. Dreisewerd, S. Spijker, R. Kingston, R. H. Bateman, A. L. Burlingame, A. B. Smit, J. van Minnen, and W. P. M. Geraerts. Biochemistry, 37:2070-2076, 1998.
	18	R. J. Johnson and K. Biemann. Biomed. Env. Mass Spectrom., 18:945-957, 1989.
	19	K. R. Jonscher and J. R. Yates. Anal. Biochem., 244:1-15, 1997.
	20	J. Lingner, T. It. Hughes, A. Shevchenko, M. Mann, V. Lundblad, and T. R. Cech. Science, 276:561-567, 1997.
	21	M. Mann and M. Wilm. Anal. Chem., 66:4390-4399, 1994.
	22	K. F. Medzihradszky, G. W. Adams, and A. L. Burlingame. J. Amer. Soc. Mass. Spectrorn., 7:1-10, 1996.
	23	K. F. Medzihradszky and A. L. Burlingame. In Shively, editor, Methods: A Companion to Methods in Enzymology. Academic Press, San Diego, 1994.
	24	S. D. Patterson and R. Aebersold. Electrophoresis, 16(10): 1791-1814, 1995.
	25	T. Sakurai, T. Matsuo, H. Matsuda, and I. Katakuse. Biomedical Mass Spectrometry, 11(8):396-399, 1984.
	26	A. Shevchenko, I. Chernushevich, W. Ens, K. G. Standing, B. Thomson, M. Wilm, and M. Mann. Rapid Cornrnun Mass Spectrorn, 11:1015-1024, 1997.
	27	M. M. Siegel and N. Bauman. Biorned. Env. Mass Spectrom., 15:333-343, 1988.
	28	J. A. Taylor and R. S. Johnson. Rapid Communications in Mass Spectrometry, 11:1067-1075, 1997.
	29	D. X. Wen, B. D. Livingston, K. F. Medzihradszky, S. Kelm, A. L. Burlingame, and J. C. Paulson. Journal of Biolooical Chemistry, 267:21011-21019, 1992.
	30	J. R. Yates, P. R. Griffin, L. E. Hood, and J. X. Zhou. In J. J. Villafranca, editor, Techniques in Protein Chemistry II, pages 477-485. Academic Press, Inc., 1991.
	31	D. Zidarov, P. Thibault, M. J. Evans, and M. J. Bertrand. Biorned. Env. Mass Spectrom., 19:13-16, 1990.

CITED BY 4

	Ting Chen , Jacob D. Jaffe , George M. Church, Algorithms for identifying protein cross-links via tandem mass spectrometry, Proceedings of the fifth annual international conference on Computational biology, p.95-102, April 22-25, 2001, Montreal, Quebec, Canada
	Gopal Pandurangan , H. Ramesh, The restriction mapping problem revisited, Journal of Computer and System Sciences, v.65 n.3, p.526-544, November 2002
	Ting Chen , Ming-Yang Kao , Matthew Tepel , John Rush , George M. Church, A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry, Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms, p.389-398, January 09-11, 2000, San Francisco, California, United States
	Ting Chen, Gene-finding via tandem mass spectrometry, Proceedings of the fifth annual international conference on Computational biology, p.87-94, April 22-25, 2001, Montreal, Quebec, Canada