Regression analysis of multiple protein structures

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Regression analysis of multiple protein structures

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Annual Conference on Research in Computational Molecular Biology archive
Proceedings of the second annual international conference on Computational molecular biology table of contents

New York, New York, United States

Pages: 276 - 284

Year of Publication: 1998

ISBN:0-89791-976-9

Authors

Thomas D. Wu	Departments of Biochemistry, Stanford University, Stanford, CA
Trevor Hastie	Departments of Statistics, Stanford University, Stanford, CA
Scott C. Schmidler	Departments of Biochemistry and Section on Medical Informatics, Stanford University, Stanford, CA
Douglas L. Brutlag	Departments of Biochemistry, Stanford University, Stanford, CA

Sponsor

SIGACT: ACM Special Interest Group on Algorithms and Computation Theory

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ACM New York, NY, USA

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Downloads (6 Weeks): 1, Downloads (12 Months): 15, Citation Count: 1

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REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

	1	Donald Bashford, Cyrus Chothia, and Arthur M. Lesk. Determinants of a protein fold: Unique features of the globin amino acid sequences. J. Mol. BioL, 196:199-216, 1987.
	2	R. Diamond. On the comparison of conformations using linear and quadratic transformations. Acta Cryst., A32:1-10, 1976.
	3	R. Diamond. On the multiple simultaneous superposition of molecular structures by rigid body transformations. Protein Sci., 1:1279-1287, 1992.
	4	Paul R. Gerber and Klaus M~dler. Superimposing several sets of atomic coordinates. Acta Cryst., A43:426--428, 1987.
	5	Mark Gerstein and Russ B. Altman. Using a measure of structural variation to define a core for the globins. Comp. Appl. Biosci., 11(6):633-644, 1995.
	6	Gene H. Golub , Charles F. Van Loan, Matrix computations (3rd ed.), Johns Hopkins University Press, Baltimore, MD, 1996
	7	Colin Goodall. Procrustes methods in the statistical analysis of shape. J. Royal $tat. Soc. B, 53(2):285--339, 1991.
	8	Osamu Gotoh. An improved algorithm for matching biological sequences. J. Mol. Biol., 162:705- 708, 1982.
	9	Trevor Hastie, Eyal Kishon, Malcolm Clark, and Jason Fan. A model for signature verification. Technical report, AT~T Bell Laboratories, 1992.
	10	Liisa Holm and Chris Sander. Protein structure alignment by alignment of distance matrices. J. Mol. Biol., 233:123-138, 1993.
	11	Simon K. Kearsley, An algorithm for the simultaneous superposition of a structural series, Journal of Computational Chemistry, v.11 n.10, p.1187-1192, Nov./Dec. 1990 [doi>10.1002/jcc.540111011]
	12	D. Sankoff and J. B. Kruskal. Time Warps, String Edits, and Macromolecules: The Theory and Practice of Sequence Comparison. Addison-Wesley, 1983.
	13	A. Shapiro, J. D. Botha, A. Pastore, and A. M. Lesk. A method for multiple superposition of structures. Acta Cryst., A48:11-14, 1992.
	14	Amit P. Singh , Douglas L. Brutlag, Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations, Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, p.284-293, June 21-26, 1997
	15	William R. Taylor, Tomas P. Flores, and Christine A. Orengo. Multiple protein structure alignment. Protein Sci., 3:1858-1870, 1994.
	16	William R. Taylor and Christine A. Orengo. Protein structure alignment. J. Mol. Biol., 208:1-22, 1989.
	17	Andrej Sali and Tom L. Blundell. Definition of general topological equivalence in protein structures: A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. J. Mol. Biol., 212:403- 428, 1990.
	18	Sanford Weisberg. Applied Linear Regression, second edition. John Wiley and Sons, 1985.
	19	Thomas D. Wu, Scott C. Schmidler, Trevor Hastie, and Douglas L. Brutlag. In Pacific Symposium on Biocomputing, 3:507-518, 1998.