ACM Portal
  Subscribe (Full Service)    Register (Limited Service, Free)    Login
  Search:   The ACM Digital Library   The Guide
  
ACM Home Page
Please provide us with feedback. Feedback
Distributing the comparison of DNA and protein sequences across heterogeneous supercomputers
Full text PdfPdf (724 KB)
Source Conference on High Performance Networking and Computing archive
Proceedings of the 1991 ACM/IEEE conference on Supercomputing table of contents
Albuquerque, New Mexico, United States
Pages: 139 - 146  
Year of Publication: 1991
ISBN:0-89791-459-7
Authors
Hugh Nicholas  Pittsburgh Supercomputing Center, 4400 Fifth Avenue, Pittsburgh, PA
Grace Giras  Pittsburgh Supercomputing Center, 4400 Fifth Avenue, Pittsburgh, PA
Vasiliki Hartonas-Garmhausen  Pittsburgh Supercomputing Center, 4400 Fifth Avenue, Pittsburgh, PA
Michael Kopko  Pittsburgh Supercomputing Center, 4400 Fifth Avenue, Pittsburgh, PA
Christopher Maher  Pittsburgh Supercomputing Center, 4400 Fifth Avenue, Pittsburgh, PA
Alexander Ropelewski  Pittsburgh Supercomputing Center, 4400 Fifth Avenue, Pittsburgh, PA
Sponsors
IEEE : Institute of Electrical and Electronics Engineers
SIGARCH: ACM Special Interest Group on Computer Architecture
Publisher
ACM  New York, NY, USA
Bibliometrics
Downloads (6 Weeks): 0,   Downloads (12 Months): 5,   Citation Count: 2
Additional Information:

references   cited by   index terms   collaborative colleagues   peer to peer  

Tools and Actions: Review this Article  
DOI Bookmark: Use this link to bookmark this Article: http://doi.acm.org/10.1145/125826.125911
What is a DOI?

REFERENCES

Note: OCR errors may be found in this Reference List extracted from the full text article. ACM has opted to expose the complete List rather than only correct and linked references.

 
1
Gotoh, O., "An Improved Algorithm for Matching Biological Sequences," J. of Molecular Biology, vol. 162, pp. 705-708, 1982.
 
2
Jones, R., Taylor, W.,IV., Zhang, X., Mesirov, J.P., and Lander, E., "Protein Sequence Comparison on the Connection Machine CM-2," Computers and DNA, SFI Studies in the science of Complexity, Vol. VII, Eds. G. Bell and T. Marr, Addison-Wesley Longman, 1989.
 
3
Sankoff, D., Kruskal, J.B., Time Warps, String Edits and Macromolecules: The Theory and Practice of Sequence Comparsion, Addison-Wesley, 1983.
 
4
Smith, T.F., Waterman, M.S., "Identification of Common Molecular Subsequences," J. of Molecular Biology, vol. 147, pp. 195-197, 1981.
 
5
Waterman, M.S., and Eggert, M., "A new Algorithm for Best Subsequence Alignments with Application to tRNA-rRNA Comparisons," J. of Molecular Biology, vol. 197, pp. 723-728, 1987.

CITED BY  2
John E. Savage, A model for multi-grained parallelism (extended abstract), Proceedings of the sixth annual ACM symposium on Parallel algorithms and architectures, p.330-335, June 27-29, 1994, Cape May, New Jersey, United States
 
Alexander Ropelewski , Hugh Nicholas , David Deerfield, Implementation of Genetic Sequence Alignment Programs on Supercomputers, The Journal of Supercomputing, v.11 n.3, p.237-253, 1997

INDEX TERMS

Primary Classification:
  C. Computer Systems Organization
  C.5 COMPUTER SYSTEM IMPLEMENTATION
      C.5.1 Large and Medium ("Mainframe") Computers

          Nouns: CRAY Y-MP

Additional Classification:
  C. Computer Systems Organization
  C.1 PROCESSOR ARCHITECTURES


General Terms:
Algorithms, Design, Languages, Performance

Collaborative Colleagues:
Hugh Nicholas: colleagues
Grace Giras: colleagues
Vasiliki Hartonas-Garmhausen: colleagues
Michael Kopko: colleagues
Christopher Maher: colleagues
Alexander Ropelewski: colleagues

Peer to Peer - Readers of this Article have also read:

The ACM Portal is published by the Association for Computing Machinery. Copyright © 2009 ACM, Inc.
Terms of Usage   Privacy Policy   Code of Ethics   Contact Us

Useful downloads: Adobe Acrobat    QuickTime    Windows Media Player    Real Player